pCRM PCE8394
| CRM: |
| PCE8394 |
|---|
| Overlaps: |
| Kr 730 |
|---|
| Reference: |
| Hoch, 1990 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 2R.3 |
|---|
| pCRM start: |
| 20,266,323 |
|---|
| pCRM end: |
| 20,267,047 |
|---|
| pCRM len: |
| 725 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,581 |
|---|
| dpse start: |
| 129,654 |
|---|
| dpse end: |
| 128,851 |
|---|
| dpse len: |
| 804 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 4.5 |
|---|
|
| percent iden: |
| 72.8% |
|---|
|
| D.mel sites: |
| 11 |
|---|
| D.pse sites: |
| 10 |
|---|
| Aligned sites: |
| 6 |
|---|
| Aligned + preserved sites: |
| 7 |
|---|
|
| D.mel site dens: |
| 15.2 |
|---|
| D.pse site dens: |
| 12.4 |
|---|
| Aligned site dens: |
| 8.3 |
|---|
| Aligned + preserved site dens: |
| 9.7 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -33,916 |
|---|
| 5' gene CG: |
| CG9380 |
|---|
| 5' gene: |
| CG9380 |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| CG9380 flybase |
|---|
| 5' gene start: |
| 20,232,407 |
|---|
| 5' gene end: |
| 20,227,198 |
|---|
| 5' gene txl start: |
| 20,232,386 |
|---|
|
| pCRM position 3' gene relative: |
| -3,137 |
|---|
| pCRM position relative to 3' gene: |
| upstream |
|---|
| 3' gene CG: |
| CG3340 |
|---|
| 3' gene: |
| Kr |
|---|
| 3' Gap/pair-rule annotation: |
| BDGP |
|---|
| 3' gene insitu: |
| Kr insitu |
|---|
| 3' gene flybase: |
| Kr flybase |
|---|
| 3' gene start: |
| 20,270,184 |
|---|
| 3' gene end: |
| 20,273,104 |
|---|
| 3' gene txl start: |
| 20,270,521 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
