pCRM PCE8401
| CRM: |
| PCE8401 |
|---|
| Overlaps: |
| 0 |
|---|
| Reference: |
| 0 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 2L.3C |
|---|
| pCRM start: |
| 12,660,502 |
|---|
| pCRM end: |
| 12,661,614 |
|---|
| pCRM len: |
| 1,113 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,646 |
|---|
| dpse start: |
| 289,810 |
|---|
| dpse end: |
| 291,142 |
|---|
| dpse len: |
| 1,333 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 4.5 |
|---|
|
| percent iden: |
| 66.3% |
|---|
|
| D.mel sites: |
| 14 |
|---|
| D.pse sites: |
| 14 |
|---|
| Aligned sites: |
| 6 |
|---|
| Aligned + preserved sites: |
| 11 |
|---|
|
| D.mel site dens: |
| 12.6 |
|---|
| D.pse site dens: |
| 10.5 |
|---|
| Aligned site dens: |
| 5.4 |
|---|
| Aligned + preserved site dens: |
| 9.9 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -2,463 |
|---|
| 5' gene CG: |
| CG15485 |
|---|
| 5' gene: |
| CG15485 |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| CG15485 flybase |
|---|
| 5' gene start: |
| 12,658,039 |
|---|
| 5' gene end: |
| 12,656,134 |
|---|
| 5' gene txl start: |
| 12,658,039 |
|---|
|
| pCRM position 3' gene relative: |
| +5861 |
|---|
| pCRM position relative to 3' gene: |
| within_intron |
|---|
| 3' gene CG: |
| CG12287 |
|---|
| 3' gene: |
| pdm2 |
|---|
| 3' Gap/pair-rule annotation: |
| BDGP |
|---|
| 3' gene insitu: |
| pdm2 insitu |
|---|
| 3' gene flybase: |
| pdm2 flybase |
|---|
| 3' gene start: |
| 12,667,475 |
|---|
| 3' gene end: |
| 12,675,182 |
|---|
| 3' gene txl start: |
| 12,667,666 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
