pCRM PCE8405

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Region plotRegion plot detailDotplot
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CRM:
PCE8405
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
1,109,402
pCRM end:
1,109,990
pCRM len:
589

D.pse fasta:
dpse unflanked
dpse arm:
3,212,420
dpse start:
53,266
dpse end:
54,664
dpse len:
1,399

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.5

percent iden:
64.7%

D.mel sites:
9
D.pse sites:
13
Aligned sites:
4
Aligned + preserved sites:
8

D.mel site dens:
15.3
D.pse site dens:
9.3
Aligned site dens:
6.8
Aligned + preserved site dens:
13.6

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-9,787
5' gene CG:
CG32336
5' gene:
CG32336
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG32336 flybase
5' gene start:
1,099,615
5' gene end:
1,098,911
5' gene txl start:
1,099,574

pCRM position 3' gene relative:
+47913
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG9102
3' gene:
bab2
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
bab2 flybase
3' gene start:
1,157,903
3' gene end:
1,121,077
3' gene txl start:
1,155,126

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: