pCRM PCE8408

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8408
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
8,379,690
pCRM end:
8,381,014
pCRM len:
1,325

D.pse fasta:
dpse unflanked
dpse arm:
3,211,870
dpse start:
109,974
dpse end:
111,699
dpse len:
1,726

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.4

percent iden:
62.9%

D.mel sites:
17
D.pse sites:
15
Aligned sites:
4
Aligned + preserved sites:
14

D.mel site dens:
12.8
D.pse site dens:
8.7
Aligned site dens:
3.0
Aligned + preserved site dens:
10.6

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+8582
5' gene CG:
CG12154
5' gene:
oc
5' Gap/pair-rule annotation:
FlyBase
5' gene insitu:
5' gene flybase:
oc flybase
5' gene start:
8,389,596
5' gene end:
8,370,285
5' gene txl start:
8,381,592

pCRM position 3' gene relative:
+8582
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG12154
3' gene:
oc
3' Gap/pair-rule annotation:
FlyBase
3' gene insitu:
3' gene flybase:
oc flybase
3' gene start:
8,389,596
3' gene end:
8,370,285
3' gene txl start:
8,381,592

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: