pCRM PCE8422
| CRM: |
| PCE8422 |
|---|
| Overlaps: |
| 0 |
|---|
| Reference: |
| 0 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 3R.3 |
|---|
| pCRM start: |
| 17,657,890 |
|---|
| pCRM end: |
| 17,658,819 |
|---|
| pCRM len: |
| 930 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,786 |
|---|
| dpse start: |
| 716,776 |
|---|
| dpse end: |
| 715,572 |
|---|
| dpse len: |
| 1,205 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 4.4 |
|---|
|
| percent iden: |
| 60.9% |
|---|
|
| D.mel sites: |
| 14 |
|---|
| D.pse sites: |
| 12 |
|---|
| Aligned sites: |
| 4 |
|---|
| Aligned + preserved sites: |
| 12 |
|---|
|
| D.mel site dens: |
| 15.1 |
|---|
| D.pse site dens: |
| 10.0 |
|---|
| Aligned site dens: |
| 4.3 |
|---|
| Aligned + preserved site dens: |
| 12.9 |
|---|
|
| pCRM position relative to 5' gene: |
| within_intron |
|---|
| pCRM position 5' gene relative: |
| +300 |
|---|
| 5' gene CG: |
| CG13416 |
|---|
| 5' gene: |
| CG13416 |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| CG13416 flybase |
|---|
| 5' gene start: |
| 17,657,590 |
|---|
| 5' gene end: |
| 17,658,596 |
|---|
| 5' gene txl start: |
| 17,657,590 |
|---|
|
| pCRM position 3' gene relative: |
| +1650 |
|---|
| pCRM position relative to 3' gene: |
| downstream |
|---|
| 3' gene CG: |
| CG31336 |
|---|
| 3' gene: |
| Gr93b |
|---|
| 3' Gap/pair-rule annotation: |
| |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| Gr93b flybase |
|---|
| 3' gene start: |
| 17,660,469 |
|---|
| 3' gene end: |
| 17,659,206 |
|---|
| 3' gene txl start: |
| 17,660,469 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
