pCRM PCE8426

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8426
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
1,268,149
pCRM end:
1,268,904
pCRM len:
756

D.pse fasta:
dpse unflanked
dpse arm:
3,212,334
dpse start:
108,214
dpse end:
109,435
dpse len:
1,222

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.4

percent iden:
62.3%

D.mel sites:
10
D.pse sites:
9
Aligned sites:
5
Aligned + preserved sites:
7

D.mel site dens:
13.2
D.pse site dens:
7.4
Aligned site dens:
6.6
Aligned + preserved site dens:
9.3

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+9658
5' gene CG:
CG5423
5' gene:
robo3
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
robo3 flybase
5' gene start:
1,258,491
5' gene end:
1,295,501
5' gene txl start:
1,258,556

pCRM position 3' gene relative:
+9658
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG5423
3' gene:
robo3
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
robo3 flybase
3' gene start:
1,258,491
3' gene end:
1,295,501
3' gene txl start:
1,258,556

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: