pCRM PCE8428
| CRM: |
| PCE8428 |
|---|
| Overlaps: |
| CE8013 |
|---|
| Reference: |
| Berman, 2004 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 2L.3C |
|---|
| pCRM start: |
| 13,989,283 |
|---|
| pCRM end: |
| 13,990,133 |
|---|
| pCRM len: |
| 851 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,211,777 |
|---|
| dpse start: |
| 208,745 |
|---|
| dpse end: |
| 209,664 |
|---|
| dpse len: |
| 920 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 4.3 |
|---|
|
| percent iden: |
| 60.8% |
|---|
|
| D.mel sites: |
| 17 |
|---|
| D.pse sites: |
| 8 |
|---|
| Aligned sites: |
| 6 |
|---|
| Aligned + preserved sites: |
| 8 |
|---|
|
| D.mel site dens: |
| 20.0 |
|---|
| D.pse site dens: |
| 8.7 |
|---|
| Aligned site dens: |
| 7.1 |
|---|
| Aligned + preserved site dens: |
| 9.4 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -5,879 |
|---|
| 5' gene CG: |
| CG8930 |
|---|
| 5' gene: |
| rk |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| rk flybase |
|---|
| 5' gene start: |
| 13,983,404 |
|---|
| 5' gene end: |
| 13,964,877 |
|---|
| 5' gene txl start: |
| 13,975,639 |
|---|
|
| pCRM position 3' gene relative: |
| -5,766 |
|---|
| pCRM position relative to 3' gene: |
| upstream |
|---|
| 3' gene CG: |
| CG4501 |
|---|
| 3' gene: |
| bgm |
|---|
| 3' Gap/pair-rule annotation: |
| |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| bgm flybase |
|---|
| 3' gene start: |
| 13,995,899 |
|---|
| 3' gene end: |
| 14,001,480 |
|---|
| 3' gene txl start: |
| 13,997,947 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
