pCRM PCE8430

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8430
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
10,258,913
pCRM end:
10,259,595
pCRM len:
683

D.pse fasta:
dpse unflanked
dpse arm:
3,209,116
dpse start:
141,141
dpse end:
140,214
dpse len:
928

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.3

percent iden:
74.7%

D.mel sites:
9
D.pse sites:
11
Aligned sites:
4
Aligned + preserved sites:
9

D.mel site dens:
13.2
D.pse site dens:
11.9
Aligned site dens:
5.9
Aligned + preserved site dens:
13.2

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+10647
5' gene CG:
CG6559
5' gene:
CG6559
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG6559 flybase
5' gene start:
10,270,242
5' gene end:
10,254,003
5' gene txl start:
10,270,236

pCRM position 3' gene relative:
+10647
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG6559
3' gene:
CG6559
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG6559 flybase
3' gene start:
10,270,242
3' gene end:
10,254,003
3' gene txl start:
10,270,236

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: