pCRM PCE8435

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Region plotRegion plot detailDotplot
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CRM:
PCE8435
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
5,445,679
pCRM end:
5,446,492
pCRM len:
814

D.pse fasta:
dpse unflanked
dpse arm:
3,212,142
dpse start:
331,567
dpse end:
330,765
dpse len:
803

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.3

percent iden:
63.3%

D.mel sites:
10
D.pse sites:
10
Aligned sites:
5
Aligned + preserved sites:
9

D.mel site dens:
12.3
D.pse site dens:
12.5
Aligned site dens:
6.1
Aligned + preserved site dens:
11.1

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-4,262
5' gene CG:
CG31647
5' gene:
CG31647
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG31647 flybase
5' gene start:
5,441,417
5' gene end:
5,427,793
5' gene txl start:
5,441,417

pCRM position 3' gene relative:
-7,363
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG6634
3' gene:
CG6634
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG6634 flybase
3' gene start:
5,453,855
3' gene end:
5,459,824
3' gene txl start:
5,454,132

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: