pCRM PCE8436

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8436
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
9,967,152
pCRM end:
9,967,845
pCRM len:
694

D.pse fasta:
dpse unflanked
dpse arm:
3,212,386
dpse start:
141,054
dpse end:
140,582
dpse len:
473

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.3

percent iden:
44.5%

D.mel sites:
10
D.pse sites:
7
Aligned sites:
5
Aligned + preserved sites:
6

D.mel site dens:
14.4
D.pse site dens:
14.8
Aligned site dens:
7.2
Aligned + preserved site dens:
8.6

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+35005
5' gene CG:
CG14162
5' gene:
CG14162
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG14162 flybase
5' gene start:
9,932,147
5' gene end:
9,998,837
5' gene txl start:
9,961,560

pCRM position 3' gene relative:
+35005
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG14162
3' gene:
CG14162
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG14162 flybase
3' gene start:
9,932,147
3' gene end:
9,998,837
3' gene txl start:
9,961,560

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: