pCRM PCE8439

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8439
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
4,770,587
pCRM end:
4,771,859
pCRM len:
1,273

D.pse fasta:
dpse unflanked
dpse arm:
3,212,623
dpse start:
517,063
dpse end:
518,238
dpse len:
1,176

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.3

percent iden:
55.5%

D.mel sites:
14
D.pse sites:
10
Aligned sites:
7
Aligned + preserved sites:
10

D.mel site dens:
11.0
D.pse site dens:
8.5
Aligned site dens:
5.5
Aligned + preserved site dens:
7.9

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+32240
5' gene CG:
CG12680
5' gene:
CG12680
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG12680 flybase
5' gene start:
4,738,347
5' gene end:
4,738,800
5' gene txl start:
4,738,347

pCRM position 3' gene relative:
-17,051
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG6824
3' gene:
ovo
3' Gap/pair-rule annotation:
BDGP
3' gene insitu:
ovo insitu
3' gene flybase:
ovo flybase
3' gene start:
4,788,910
3' gene end:
4,810,318
3' gene txl start:
4,789,744

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: