pCRM PCE8441

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Region plotRegion plot detailDotplot
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CRM:
PCE8441
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2R.3
pCRM start:
8,434,804
pCRM end:
8,435,354
pCRM len:
551

D.pse fasta:
dpse unflanked
dpse arm:
3,212,289
dpse start:
134,336
dpse end:
133,803
dpse len:
534

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.3

percent iden:
69.1%

D.mel sites:
9
D.pse sites:
7
Aligned sites:
4
Aligned + preserved sites:
7

D.mel site dens:
16.3
D.pse site dens:
13.1
Aligned site dens:
7.3
Aligned + preserved site dens:
12.7

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-15,757
5' gene CG:
CG17048
5' gene:
CG17048
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG17048 flybase
5' gene start:
8,419,047
5' gene end:
8,418,522
5' gene txl start:
8,419,047

pCRM position 3' gene relative:
+7074
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG10814
3' gene:
CG10814
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG10814 flybase
3' gene start:
8,442,428
3' gene end:
8,440,684
3' gene txl start:
8,442,402

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: