pCRM PCE8445

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8445
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
9,353,080
pCRM end:
9,354,054
pCRM len:
975

D.pse fasta:
dpse unflanked
dpse arm:
3,212,385
dpse start:
278,295
dpse end:
277,253
dpse len:
1,043

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.3

percent iden:
68.2%

D.mel sites:
13
D.pse sites:
9
Aligned sites:
6
Aligned + preserved sites:
9

D.mel site dens:
13.3
D.pse site dens:
8.6
Aligned site dens:
6.2
Aligned + preserved site dens:
9.2

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-3,804
5' gene CG:
CG12538
5' gene:
CG12538
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG12538 flybase
5' gene start:
9,349,276
5' gene end:
9,348,691
5' gene txl start:
9,349,276

pCRM position 3' gene relative:
+17071
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG31337
3' gene:
CG31337
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG31337 flybase
3' gene start:
9,371,125
3' gene end:
9,369,712
3' gene txl start:
9,370,956

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: