pCRM PCE8460

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Region plotRegion plot detailDotplot
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CRM:
PCE8460
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
9,962,785
pCRM end:
9,964,166
pCRM len:
1,382

D.pse fasta:
dpse unflanked
dpse arm:
3,212,137
dpse start:
27,828
dpse end:
26,655
dpse len:
1,174

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.2

percent iden:
54.6%

D.mel sites:
14
D.pse sites:
9
Aligned sites:
8
Aligned + preserved sites:
9

D.mel site dens:
10.1
D.pse site dens:
7.7
Aligned site dens:
5.8
Aligned + preserved site dens:
6.5

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+3065
5' gene CG:
CG4651
5' gene:
RpL13
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
RpL13 flybase
5' gene start:
9,959,720
5' gene end:
9,960,904
5' gene txl start:
9,960,043

pCRM position 3' gene relative:
-12,889
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG4722
3' gene:
bib
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
bib flybase
3' gene start:
9,977,055
3' gene end:
9,987,954
3' gene txl start:
9,977,358

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: