pCRM PCE8461

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8461
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
13,691,125
pCRM end:
13,692,755
pCRM len:
1,631

D.pse fasta:
dpse unflanked
dpse arm:
3,212,623
dpse start:
171,338
dpse end:
169,108
dpse len:
2,231

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.2

percent iden:
55.3%

D.mel sites:
21
D.pse sites:
19
Aligned sites:
4
Aligned + preserved sites:
15

D.mel site dens:
12.9
D.pse site dens:
8.5
Aligned site dens:
2.5
Aligned + preserved site dens:
9.2

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+5216
5' gene CG:
CG11068
5' gene:
CG11068
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG11068 flybase
5' gene start:
13,685,909
5' gene end:
13,687,250
5' gene txl start:
13,686,079

pCRM position 3' gene relative:
+5235
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG32613
3' gene:
CG32613
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG32613 flybase
3' gene start:
13,697,990
3' gene end:
13,680,980
3' gene txl start:
13,682,107

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: