pCRM PCE8466

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Region plotRegion plot detailDotplot
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CRM:
PCE8466
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
4,137,270
pCRM end:
4,137,983
pCRM len:
714

D.pse fasta:
dpse unflanked
dpse arm:
3,213,110
dpse start:
1,801,914
dpse end:
1,802,760
dpse len:
847

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.2

percent iden:
70.2%

D.mel sites:
9
D.pse sites:
8
Aligned sites:
5
Aligned + preserved sites:
6

D.mel site dens:
12.6
D.pse site dens:
9.4
Aligned site dens:
7.0
Aligned + preserved site dens:
8.4

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-148
5' gene CG:
CG15000
5' gene:
CG15000
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG15000 flybase
5' gene start:
4,137,122
5' gene end:
4,134,467
5' gene txl start:
4,137,024

pCRM position 3' gene relative:
+3292
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG15001
3' gene:
CG15001
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG15001 flybase
3' gene start:
4,141,275
3' gene end:
4,140,948
3' gene txl start:
4,141,275

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: