pCRM PCE8475

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8475
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
13,564,776
pCRM end:
13,566,272
pCRM len:
1,497

D.pse fasta:
dpse unflanked
dpse arm:
3,213,110
dpse start:
326,685
dpse end:
325,093
dpse len:
1,593

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.2

percent iden:
62.9%

D.mel sites:
15
D.pse sites:
13
Aligned sites:
7
Aligned + preserved sites:
11

D.mel site dens:
10.0
D.pse site dens:
8.2
Aligned site dens:
4.7
Aligned + preserved site dens:
7.3

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+58045
5' gene CG:
CG12478
5' gene:
bru-3
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
bru-3 flybase
5' gene start:
13,624,317
5' gene end:
13,495,485
5' gene txl start:
13,622,046

pCRM position 3' gene relative:
+58045
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG12478
3' gene:
bru-3
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
bru-3 flybase
3' gene start:
13,624,317
3' gene end:
13,495,485
3' gene txl start:
13,622,046

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: