pCRM PCE8476

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Region plotRegion plot detailDotplot
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CRM:
PCE8476
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
2,611,713
pCRM end:
2,612,394
pCRM len:
682

D.pse fasta:
dpse unflanked
dpse arm:
3,213,189
dpse start:
1,695,832
dpse end:
1,698,044
dpse len:
2,213

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.2

percent iden:
68.0%

D.mel sites:
9
D.pse sites:
12
Aligned sites:
5
Aligned + preserved sites:
7

D.mel site dens:
13.2
D.pse site dens:
5.4
Aligned site dens:
7.3
Aligned + preserved site dens:
10.3

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+9001
5' gene CG:
CG15395
5' gene:
CG15395
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG15395 flybase
5' gene start:
2,602,712
5' gene end:
2,603,852
5' gene txl start:
2,602,724

pCRM position 3' gene relative:
+27818
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG9962
3' gene:
CG9962
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG9962 flybase
3' gene start:
2,640,212
3' gene end:
2,639,252
3' gene txl start:
2,640,212

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: