pCRM PCE8479

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Region plotRegion plot detailDotplot
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CRM:
PCE8479
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
12,644,990
pCRM end:
12,646,008
pCRM len:
1,019

D.pse fasta:
dpse unflanked
dpse arm:
3,213,068
dpse start:
1,486,060
dpse end:
1,487,273
dpse len:
1,214

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.2

percent iden:
59.6%

D.mel sites:
14
D.pse sites:
9
Aligned sites:
6
Aligned + preserved sites:
9

D.mel site dens:
13.7
D.pse site dens:
7.4
Aligned site dens:
5.9
Aligned + preserved site dens:
8.8

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+59508
5' gene CG:
CG32111
5' gene:
CG32111
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG32111 flybase
5' gene start:
12,585,482
5' gene end:
12,605,827
5' gene txl start:
12,599,700

pCRM position 3' gene relative:
-5,286
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG10601
3' gene:
mirr
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
mirr flybase
3' gene start:
12,651,294
3' gene end:
12,667,690
3' gene txl start:
12,651,858

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: