pCRM PCE8480
| CRM: |
| PCE8480 |
|---|
| Overlaps: |
| 0 |
|---|
| Reference: |
| 0 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| X.3 |
|---|
| pCRM start: |
| 13,596,848 |
|---|
| pCRM end: |
| 13,598,453 |
|---|
| pCRM len: |
| 1,606 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,623 |
|---|
| dpse start: |
| 274,569 |
|---|
| dpse end: |
| 272,682 |
|---|
| dpse len: |
| 1,888 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 4.2 |
|---|
|
| percent iden: |
| 71.0% |
|---|
|
| D.mel sites: |
| 21 |
|---|
| D.pse sites: |
| 14 |
|---|
| Aligned sites: |
| 3 |
|---|
| Aligned + preserved sites: |
| 13 |
|---|
|
| D.mel site dens: |
| 13.1 |
|---|
| D.pse site dens: |
| 7.4 |
|---|
| Aligned site dens: |
| 1.9 |
|---|
| Aligned + preserved site dens: |
| 8.1 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -9,065 |
|---|
| 5' gene CG: |
| CG11071 |
|---|
| 5' gene: |
| CG11071 |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| CG11071 flybase |
|---|
| 5' gene start: |
| 13,587,783 |
|---|
| 5' gene end: |
| 13,584,757 |
|---|
| 5' gene txl start: |
| 13,587,783 |
|---|
|
| pCRM position 3' gene relative: |
| +17718 |
|---|
| pCRM position relative to 3' gene: |
| downstream |
|---|
| 3' gene CG: |
| CG32611 |
|---|
| 3' gene: |
| CG32611 |
|---|
| 3' Gap/pair-rule annotation: |
| |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| CG32611 flybase |
|---|
| 3' gene start: |
| 13,616,171 |
|---|
| 3' gene end: |
| 13,600,040 |
|---|
| 3' gene txl start: |
| 13,616,171 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
