pCRM PCE8507

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8507
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
7,100,782
pCRM end:
7,101,787
pCRM len:
1,006

D.pse fasta:
dpse unflanked
dpse arm:
3,213,012
dpse start:
300,625
dpse end:
301,702
dpse len:
1,078

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.0

percent iden:
64.9%

D.mel sites:
13
D.pse sites:
7
Aligned sites:
7
Aligned + preserved sites:
7

D.mel site dens:
12.9
D.pse site dens:
6.5
Aligned site dens:
7.0
Aligned + preserved site dens:
7.0

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+1610
5' gene CG:
CG1999
5' gene:
CG1999
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG1999 flybase
5' gene start:
7,099,172
5' gene end:
7,100,445
5' gene txl start:
7,099,508

pCRM position 3' gene relative:
+44350
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG1677
3' gene:
CG1677
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG1677 flybase
3' gene start:
7,146,137
3' gene end:
7,021,465
3' gene txl start:
7,025,091

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: