pCRM PCE8521

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Region plotRegion plot detailDotplot
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CRM:
PCE8521
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
7,252,370
pCRM end:
7,253,008
pCRM len:
639

D.pse fasta:
dpse unflanked
dpse arm:
3,212,143
dpse start:
184,024
dpse end:
183,570
dpse len:
455

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.0

percent iden:
51.3%

D.mel sites:
9
D.pse sites:
6
Aligned sites:
5
Aligned + preserved sites:
6

D.mel site dens:
14.1
D.pse site dens:
13.2
Aligned site dens:
7.8
Aligned + preserved site dens:
9.4

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+2569
5' gene CG:
CG31909
5' gene:
CG31909
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG31909 flybase
5' gene start:
7,249,801
5' gene end:
7,250,346
5' gene txl start:
7,249,962

pCRM position 3' gene relative:
+16391
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG4698
3' gene:
Wnt4
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
Wnt4 flybase
3' gene start:
7,269,399
3' gene end:
7,247,690
3' gene txl start:
7,267,790

Additional Gap/pair-rule gene within 20kb:
Ndae1
Gap/pair-rule annotation:
BDGP
pCRM relative position:
-19,639