pCRM PCE8522

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8522
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
15,325,630
pCRM end:
15,326,485
pCRM len:
856

D.pse fasta:
dpse unflanked
dpse arm:
3,212,649
dpse start:
979,145
dpse end:
977,475
dpse len:
1,671

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.0

percent iden:
65.1%

D.mel sites:
11
D.pse sites:
19
Aligned sites:
4
Aligned + preserved sites:
10

D.mel site dens:
12.9
D.pse site dens:
11.4
Aligned site dens:
4.7
Aligned + preserved site dens:
11.7

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+3044
5' gene CG:
CG31175
5' gene:
Dys
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
Dys flybase
5' gene start:
15,329,529
5' gene end:
15,420,470
5' gene txl start:
15,329,598

pCRM position 3' gene relative:
+3044
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG31175
3' gene:
Dys
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
Dys flybase
3' gene start:
15,329,529
3' gene end:
15,420,470
3' gene txl start:
15,329,598

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: