pCRM PCE8523

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8523
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
13,942,711
pCRM end:
13,943,621
pCRM len:
911

D.pse fasta:
dpse unflanked
dpse arm:
3,213,197
dpse start:
134,334
dpse end:
135,957
dpse len:
1,624

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.0

percent iden:
58.6%

D.mel sites:
11
D.pse sites:
11
Aligned sites:
5
Aligned + preserved sites:
9

D.mel site dens:
12.1
D.pse site dens:
6.8
Aligned site dens:
5.5
Aligned + preserved site dens:
9.9

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+4313
5' gene CG:
CG7847
5' gene:
sr
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
sr flybase
5' gene start:
13,947,934
5' gene end:
13,959,486
5' gene txl start:
13,952,758

pCRM position 3' gene relative:
+4313
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG7847
3' gene:
sr
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
sr flybase
3' gene start:
13,947,934
3' gene end:
13,959,486
3' gene txl start:
13,952,758

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: