pCRM PCE8532

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8532
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
1,404,981
pCRM end:
1,405,630
pCRM len:
650

D.pse fasta:
dpse unflanked
dpse arm:
3,212,168
dpse start:
46,710
dpse end:
47,343
dpse len:
634

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.0

percent iden:
66.8%

D.mel sites:
11
D.pse sites:
7
Aligned sites:
5
Aligned + preserved sites:
6

D.mel site dens:
16.9
D.pse site dens:
11.0
Aligned site dens:
7.7
Aligned + preserved site dens:
9.2

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+16485
5' gene CG:
CG5481
5' gene:
lea
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
lea flybase
5' gene start:
1,422,115
5' gene end:
1,382,553
5' gene txl start:
1,421,831

pCRM position 3' gene relative:
+16485
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG5481
3' gene:
lea
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
lea flybase
3' gene start:
1,422,115
3' gene end:
1,382,553
3' gene txl start:
1,421,831

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: