pCRM PCE8543

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Region plotRegion plot detailDotplot
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CRM:
PCE8543
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
7,088,709
pCRM end:
7,089,648
pCRM len:
940

D.pse fasta:
dpse unflanked
dpse arm:
3,213,012
dpse start:
318,163
dpse end:
316,727
dpse len:
1,437

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.9

percent iden:
59.1%

D.mel sites:
11
D.pse sites:
11
Aligned sites:
5
Aligned + preserved sites:
9

D.mel site dens:
11.7
D.pse site dens:
7.7
Aligned site dens:
5.3
Aligned + preserved site dens:
9.6

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-838
5' gene CG:
CG15034
5' gene:
CG15034
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG15034 flybase
5' gene start:
7,087,871
5' gene end:
7,087,353
5' gene txl start:
7,087,668

pCRM position 3' gene relative:
-9,524
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG1999
3' gene:
CG1999
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG1999 flybase
3' gene start:
7,099,172
3' gene end:
7,100,445
3' gene txl start:
7,099,508

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: