pCRM PCE8547

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Region plotRegion plot detailDotplot
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CRM:
PCE8547
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
3,111,977
pCRM end:
3,112,560
pCRM len:
584

D.pse fasta:
dpse unflanked
dpse arm:
3,212,336
dpse start:
46,284
dpse end:
47,020
dpse len:
737

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.9

percent iden:
60.3%

D.mel sites:
9
D.pse sites:
6
Aligned sites:
4
Aligned + preserved sites:
5

D.mel site dens:
15.4
D.pse site dens:
8.1
Aligned site dens:
6.8
Aligned + preserved site dens:
8.6

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+19670
5' gene CG:
CG32498
5' gene:
dnc
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
dnc flybase
5' gene start:
3,092,307
5' gene end:
3,097,784
5' gene txl start:
3,096,150

pCRM position 3' gene relative:
-19,060
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG10798
3' gene:
dm
3' Gap/pair-rule annotation:
BDGP
3' gene insitu:
dm insitu
3' gene flybase:
dm flybase
3' gene start:
3,131,620
3' gene end:
3,144,454
3' gene txl start:
3,133,443

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: