pCRM PCE8552

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8552
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
19,612,876
pCRM end:
19,613,719
pCRM len:
844

D.pse fasta:
dpse unflanked
dpse arm:
3,212,171
dpse start:
306,364
dpse end:
305,444
dpse len:
921

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.9

percent iden:
64.2%

D.mel sites:
10
D.pse sites:
8
Aligned sites:
5
Aligned + preserved sites:
8

D.mel site dens:
11.8
D.pse site dens:
8.7
Aligned site dens:
5.9
Aligned + preserved site dens:
9.5

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+23384
5' gene CG:
CG10443
5' gene:
Lar
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
Lar flybase
5' gene start:
19,589,492
5' gene end:
19,709,645
5' gene txl start:
19,589,609

pCRM position 3' gene relative:
+23384
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG10443
3' gene:
Lar
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
Lar flybase
3' gene start:
19,589,492
3' gene end:
19,709,645
3' gene txl start:
19,589,609

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: