pCRM PCE8560

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8560
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2R.3
pCRM start:
9,444,567
pCRM end:
9,445,584
pCRM len:
1,018

D.pse fasta:
dpse unflanked
dpse arm:
3,212,228
dpse start:
25,912
dpse end:
24,842
dpse len:
1,071

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.9

percent iden:
59.0%

D.mel sites:
13
D.pse sites:
9
Aligned sites:
6
Aligned + preserved sites:
8

D.mel site dens:
12.8
D.pse site dens:
8.4
Aligned site dens:
5.9
Aligned + preserved site dens:
7.9

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+2717
5' gene CG:
CG8422
5' gene:
CG8422
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG8422 flybase
5' gene start:
9,441,850
5' gene end:
9,449,085
5' gene txl start:
9,445,931

pCRM position 3' gene relative:
+2717
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG8422
3' gene:
CG8422
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG8422 flybase
3' gene start:
9,441,850
3' gene end:
9,449,085
3' gene txl start:
9,445,931

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: