pCRM PCE8561
| CRM: |
| PCE8561 |
|---|
| Overlaps: |
| CE8023 |
|---|
| Reference: |
| Berman, 2004 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 3R.3 |
|---|
| pCRM start: |
| 2,594,997 |
|---|
| pCRM end: |
| 2,596,453 |
|---|
| pCRM len: |
| 1,457 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,942 |
|---|
| dpse start: |
| 1,684,820 |
|---|
| dpse end: |
| 1,686,685 |
|---|
| dpse len: |
| 1,866 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 3.9 |
|---|
|
| percent iden: |
| 64.2% |
|---|
|
| D.mel sites: |
| 18 |
|---|
| D.pse sites: |
| 11 |
|---|
| Aligned sites: |
| 6 |
|---|
| Aligned + preserved sites: |
| 11 |
|---|
|
| D.mel site dens: |
| 12.4 |
|---|
| D.pse site dens: |
| 5.9 |
|---|
| Aligned site dens: |
| 4.1 |
|---|
| Aligned + preserved site dens: |
| 7.5 |
|---|
|
| pCRM position relative to 5' gene: |
| downstream |
|---|
| pCRM position 5' gene relative: |
| +5869 |
|---|
| 5' gene CG: |
| CG2198 |
|---|
| 5' gene: |
| Ama |
|---|
| 5' Gap/pair-rule annotation: |
| BDGP |
|---|
| 5' gene insitu: |
| Ama insitu |
|---|
| 5' gene flybase: |
| Ama flybase |
|---|
| 5' gene start: |
| 2,589,128 |
|---|
| 5' gene end: |
| 2,590,984 |
|---|
| 5' gene txl start: |
| 2,589,562 |
|---|
|
| pCRM position 3' gene relative: |
| -21,105 |
|---|
| pCRM position relative to 3' gene: |
| upstream |
|---|
| 3' gene CG: |
| CG2189 |
|---|
| 3' gene: |
| Dfd |
|---|
| 3' Gap/pair-rule annotation: |
| FlyBase |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| Dfd flybase |
|---|
| 3' gene start: |
| 2,617,558 |
|---|
| 3' gene end: |
| 2,628,154 |
|---|
| 3' gene txl start: |
| 2,618,047 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| bcd |
|---|
| Gap/pair-rule annotation: |
| BDGP |
|---|
| pCRM relative position: |
| -9,797 |
|---|
