pCRM PCE8564

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8564
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
9,441,828
pCRM end:
9,443,049
pCRM len:
1,222

D.pse fasta:
dpse unflanked
dpse arm:
3,212,341
dpse start:
107,805
dpse end:
108,811
dpse len:
1,007

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.9

percent iden:
47.0%

D.mel sites:
15
D.pse sites:
12
Aligned sites:
5
Aligned + preserved sites:
11

D.mel site dens:
12.3
D.pse site dens:
11.9
Aligned site dens:
4.1
Aligned + preserved site dens:
9.0

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+8657
5' gene CG:
CG12653
5' gene:
btd
5' Gap/pair-rule annotation:
FlyBase
5' gene insitu:
5' gene flybase:
btd flybase
5' gene start:
9,433,171
5' gene end:
9,436,557
5' gene txl start:
9,433,657

pCRM position 3' gene relative:
-48,893
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG1343
3' gene:
Sp1
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
Sp1 flybase
3' gene start:
9,491,942
3' gene end:
9,494,253
3' gene txl start:
9,491,942

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: