pCRM PCE8576

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Region plotRegion plot detailDotplot
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CRM:
PCE8576
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
12,596,022
pCRM end:
12,597,333
pCRM len:
1,312

D.pse fasta:
dpse unflanked
dpse arm:
3,212,236
dpse start:
380,874
dpse end:
382,232
dpse len:
1,359

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.8

percent iden:
64.7%

D.mel sites:
16
D.pse sites:
10
Aligned sites:
5
Aligned + preserved sites:
10

D.mel site dens:
12.2
D.pse site dens:
7.4
Aligned site dens:
3.8
Aligned + preserved site dens:
7.6

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-18,893
5' gene CG:
CG31275
5' gene:
CG31275
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG31275 flybase
5' gene start:
12,577,129
5' gene end:
12,576,474
5' gene txl start:
12,577,013

pCRM position 3' gene relative:
-16,717
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG3853
3' gene:
Glut3
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
Glut3 flybase
3' gene start:
12,614,050
3' gene end:
12,615,763
3' gene txl start:
12,614,087

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: