pCRM PCE8578

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8578
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
10,564,075
pCRM end:
10,564,501
pCRM len:
427

D.pse fasta:
dpse unflanked
dpse arm:
3,212,642
dpse start:
789,995
dpse end:
790,241
dpse len:
247

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.8

percent iden:
40.5%

D.mel sites:
9
D.pse sites:
4
Aligned sites:
4
Aligned + preserved sites:
4

D.mel site dens:
21.1
D.pse site dens:
16.2
Aligned site dens:
9.4
Aligned + preserved site dens:
9.4

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+4377
5' gene CG:
CG6138
5' gene:
CG6138
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG6138 flybase
5' gene start:
10,559,698
5' gene end:
10,568,032
5' gene txl start:
10,559,791

pCRM position 3' gene relative:
+4377
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG6138
3' gene:
CG6138
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG6138 flybase
3' gene start:
10,559,698
3' gene end:
10,568,032
3' gene txl start:
10,559,791

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: