pCRM PCE8586

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Region plotRegion plot detailDotplot
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CRM:
PCE8586
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
3,124,600
pCRM end:
3,125,781
pCRM len:
1,182

D.pse fasta:
dpse unflanked
dpse arm:
3,213,236
dpse start:
538,157
dpse end:
539,602
dpse len:
1,446

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.8

percent iden:
67.0%

D.mel sites:
15
D.pse sites:
12
Aligned sites:
6
Aligned + preserved sites:
9

D.mel site dens:
12.7
D.pse site dens:
8.3
Aligned site dens:
5.1
Aligned + preserved site dens:
7.6

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+9468
5' gene CG:
CG32466
5' gene:
rn
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
rn flybase
5' gene start:
3,134,068
5' gene end:
3,099,782
5' gene txl start:
3,134,062

pCRM position 3' gene relative:
+2132
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG32467
3' gene:
CG32467
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG32467 flybase
3' gene start:
3,127,913
3' gene end:
3,127,457
3' gene txl start:
3,127,913

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: