pCRM PCE8588

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8588
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
15,857,208
pCRM end:
15,857,812
pCRM len:
605

D.pse fasta:
dpse unflanked
dpse arm:
3,212,230
dpse start:
195,901
dpse end:
195,355
dpse len:
547

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.8

percent iden:
61.2%

D.mel sites:
11
D.pse sites:
8
Aligned sites:
3
Aligned + preserved sites:
8

D.mel site dens:
18.2
D.pse site dens:
14.6
Aligned site dens:
5.0
Aligned + preserved site dens:
13.2

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-2,995
5' gene CG:
CG32577
5' gene:
disco-r
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
disco-r flybase
5' gene start:
15,854,213
5' gene end:
15,849,321
5' gene txl start:
15,854,213

pCRM position 3' gene relative:
+89941
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG9908
3' gene:
disco
3' Gap/pair-rule annotation:
BDGP
3' gene insitu:
disco insitu
3' gene flybase:
disco flybase
3' gene start:
15,947,753
3' gene end:
15,941,616
3' gene txl start:
15,944,297

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: