pCRM PCE8593

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8593
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
474,796
pCRM end:
475,488
pCRM len:
693

D.pse fasta:
dpse unflanked
dpse arm:
3,213,082
dpse start:
71,774
dpse end:
70,951
dpse len:
824

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.8

percent iden:
61.2%

D.mel sites:
9
D.pse sites:
7
Aligned sites:
5
Aligned + preserved sites:
6

D.mel site dens:
13.0
D.pse site dens:
8.5
Aligned site dens:
7.2
Aligned + preserved site dens:
8.7

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+45730
5' gene CG:
CG17046
5' gene:
klar
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
klar flybase
5' gene start:
521,218
5' gene end:
414,886
5' gene txl start:
489,140

pCRM position 3' gene relative:
+45730
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG17046
3' gene:
klar
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
klar flybase
3' gene start:
521,218
3' gene end:
414,886
3' gene txl start:
489,140

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: