pCRM PCE8605

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Region plotRegion plot detailDotplot
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CRM:
PCE8605
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
14,748,256
pCRM end:
14,748,909
pCRM len:
654

D.pse fasta:
dpse unflanked
dpse arm:
3,213,050
dpse start:
740,045
dpse end:
739,311
dpse len:
735

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.7

percent iden:
74.9%

D.mel sites:
9
D.pse sites:
13
Aligned sites:
4
Aligned + preserved sites:
7

D.mel site dens:
13.8
D.pse site dens:
17.7
Aligned site dens:
6.1
Aligned + preserved site dens:
10.7

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+7246
5' gene CG:
CG9425
5' gene:
CG9425
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG9425 flybase
5' gene start:
14,741,010
5' gene end:
14,748,230
5' gene txl start:
14,741,010

pCRM position 3' gene relative:
+2160
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG5258
3' gene:
NHP2
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
NHP2 flybase
3' gene start:
14,751,069
3' gene end:
14,750,269
3' gene txl start:
14,750,970

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: