pCRM PCE8611

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8611
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
6,219,157
pCRM end:
6,220,296
pCRM len:
1,140

D.pse fasta:
dpse unflanked
dpse arm:
3,212,183
dpse start:
258,474
dpse end:
262,399
dpse len:
3,926

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.7

percent iden:
61.1%

D.mel sites:
13
D.pse sites:
21
Aligned sites:
3
Aligned + preserved sites:
13

D.mel site dens:
11.4
D.pse site dens:
5.3
Aligned site dens:
2.6
Aligned + preserved site dens:
11.4

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+1893
5' gene CG:
CG9481
5' gene:
Ugt37b1
5' Gap/pair-rule annotation:
BDGP
5' gene insitu:
Ugt37b1 insitu
5' gene flybase:
Ugt37b1 flybase
5' gene start:
6,217,264
5' gene end:
6,219,057
5' gene txl start:
6,217,293

pCRM position 3' gene relative:
-27,794
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG9486
3' gene:
CG9486
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG9486 flybase
3' gene start:
6,248,090
3' gene end:
6,248,741
3' gene txl start:
6,248,090

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: