pCRM PCE8612

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8612
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
17,285,680
pCRM end:
17,286,383
pCRM len:
704

D.pse fasta:
dpse unflanked
dpse arm:
3,212,381
dpse start:
228,445
dpse end:
229,364
dpse len:
920

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.7

percent iden:
70.2%

D.mel sites:
10
D.pse sites:
9
Aligned sites:
5
Aligned + preserved sites:
6

D.mel site dens:
14.2
D.pse site dens:
9.8
Aligned site dens:
7.1
Aligned + preserved site dens:
8.5

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-15,390
5' gene CG:
CG6380
5' gene:
CG6380
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG6380 flybase
5' gene start:
17,270,290
5' gene end:
17,269,252
5' gene txl start:
17,270,191

pCRM position 3' gene relative:
-55,194
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG31804
3' gene:
CG31804
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG31804 flybase
3' gene start:
17,341,577
3' gene end:
17,342,318
3' gene txl start:
17,341,679

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: