pCRM PCE8616

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8616
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
14,248,363
pCRM end:
14,249,388
pCRM len:
1,026

D.pse fasta:
dpse unflanked
dpse arm:
3,212,472
dpse start:
104,090
dpse end:
103,041
dpse len:
1,050

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.7

percent iden:
66.2%

D.mel sites:
14
D.pse sites:
11
Aligned sites:
4
Aligned + preserved sites:
9

D.mel site dens:
13.6
D.pse site dens:
10.5
Aligned site dens:
3.9
Aligned + preserved site dens:
8.8

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+25109
5' gene CG:
CG17697
5' gene:
fz
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
fz flybase
5' gene start:
14,223,254
5' gene end:
14,317,528
5' gene txl start:
14,223,934

pCRM position 3' gene relative:
+25109
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG17697
3' gene:
fz
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
fz flybase
3' gene start:
14,223,254
3' gene end:
14,317,528
3' gene txl start:
14,223,934

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: