pCRM PCE8620

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8620
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2R.3
pCRM start:
16,617,033
pCRM end:
16,617,743
pCRM len:
711

D.pse fasta:
dpse unflanked
dpse arm:
3,213,122
dpse start:
930,170
dpse end:
929,061
dpse len:
1,110

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.7

percent iden:
63.7%

D.mel sites:
9
D.pse sites:
6
Aligned sites:
5
Aligned + preserved sites:
6

D.mel site dens:
12.7
D.pse site dens:
5.4
Aligned site dens:
7.0
Aligned + preserved site dens:
8.4

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-2,030
5' gene CG:
CG10440
5' gene:
CG10440
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG10440 flybase
5' gene start:
16,615,003
5' gene end:
16,603,796
5' gene txl start:
16,606,189

pCRM position 3' gene relative:
-9,007
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG30222
3' gene:
CG30222
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG30222 flybase
3' gene start:
16,626,750
3' gene end:
16,628,542
3' gene txl start:
16,626,750

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: