pCRM PCE8623

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8623
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
14,296,353
pCRM end:
14,297,064
pCRM len:
712

D.pse fasta:
dpse unflanked
dpse arm:
3,213,064
dpse start:
181,415
dpse end:
182,241
dpse len:
827

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.7

percent iden:
71.6%

D.mel sites:
9
D.pse sites:
7
Aligned sites:
5
Aligned + preserved sites:
6

D.mel site dens:
12.6
D.pse site dens:
8.5
Aligned site dens:
7.0
Aligned + preserved site dens:
8.4

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+6045
5' gene CG:
CG32970
5' gene:
CG32970
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG32970 flybase
5' gene start:
14,290,308
5' gene end:
14,293,150
5' gene txl start:
14,290,308

pCRM position 3' gene relative:
+51391
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG15288
3' gene:
wb
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
wb flybase
3' gene start:
14,245,673
3' gene end:
14,310,417
3' gene txl start:
14,245,872

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: