pCRM PCE8630
| CRM: |
| PCE8630 |
|---|
| Overlaps: |
| 0 |
|---|
| Reference: |
| 0 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 3R.3 |
|---|
| pCRM start: |
| 888,267 |
|---|
| pCRM end: |
| 888,982 |
|---|
| pCRM len: |
| 716 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,213,126 |
|---|
| dpse start: |
| 447,352 |
|---|
| dpse end: |
| 446,526 |
|---|
| dpse len: |
| 827 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 3.7 |
|---|
|
| percent iden: |
| 68.9% |
|---|
|
| D.mel sites: |
| 9 |
|---|
| D.pse sites: |
| 8 |
|---|
| Aligned sites: |
| 5 |
|---|
| Aligned + preserved sites: |
| 6 |
|---|
|
| D.mel site dens: |
| 12.6 |
|---|
| D.pse site dens: |
| 9.7 |
|---|
| Aligned site dens: |
| 7.0 |
|---|
| Aligned + preserved site dens: |
| 8.4 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -73,796 |
|---|
| 5' gene CG: |
| CG2022 |
|---|
| 5' gene: |
| CG2022 |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| CG2022 flybase |
|---|
| 5' gene start: |
| 814,471 |
|---|
| 5' gene end: |
| 812,383 |
|---|
| 5' gene txl start: |
| 814,408 |
|---|
|
| pCRM position 3' gene relative: |
| +23423 |
|---|
| pCRM position relative to 3' gene: |
| downstream |
|---|
| 3' gene CG: |
| CG2530 |
|---|
| 3' gene: |
| corto |
|---|
| 3' Gap/pair-rule annotation: |
| BDGP |
|---|
| 3' gene insitu: |
| corto insitu |
|---|
| 3' gene flybase: |
| corto flybase |
|---|
| 3' gene start: |
| 912,405 |
|---|
| 3' gene end: |
| 909,339 |
|---|
| 3' gene txl start: |
| 911,744 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
