pCRM PCE8631

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8631
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
4,062,649
pCRM end:
4,063,364
pCRM len:
716

D.pse fasta:
dpse unflanked
dpse arm:
3,212,586
dpse start:
359,895
dpse end:
361,037
dpse len:
1,143

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.7

percent iden:
53.6%

D.mel sites:
10
D.pse sites:
7
Aligned sites:
5
Aligned + preserved sites:
6

D.mel site dens:
14.0
D.pse site dens:
6.1
Aligned site dens:
7.0
Aligned + preserved site dens:
8.4

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+38702
5' gene CG:
CG12676
5' gene:
ed
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
ed flybase
5' gene start:
4,023,947
5' gene end:
4,107,628
5' gene txl start:
4,025,244

pCRM position 3' gene relative:
+38702
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG12676
3' gene:
ed
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
ed flybase
3' gene start:
4,023,947
3' gene end:
4,107,628
3' gene txl start:
4,025,244

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: