pCRM PCE8632

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8632
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
5,813,553
pCRM end:
5,814,224
pCRM len:
672

D.pse fasta:
dpse unflanked
dpse arm:
3,210,235
dpse start:
341,766
dpse end:
340,994
dpse len:
773

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.7

percent iden:
80.4%

D.mel sites:
10
D.pse sites:
8
Aligned sites:
4
Aligned + preserved sites:
7

D.mel site dens:
14.9
D.pse site dens:
10.3
Aligned site dens:
6.0
Aligned + preserved site dens:
10.4

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-8,631
5' gene CG:
CG10491
5' gene:
vn
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
vn flybase
5' gene start:
5,804,922
5' gene end:
5,772,997
5' gene txl start:
5,802,866

pCRM position 3' gene relative:
-16,585
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG5568
3' gene:
CG5568
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG5568 flybase
3' gene start:
5,830,809
3' gene end:
5,832,827
3' gene txl start:
5,830,905

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: