pCRM PCE8640

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8640
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
8,901,043
pCRM end:
8,901,919
pCRM len:
877

D.pse fasta:
dpse unflanked
dpse arm:
3,212,652
dpse start:
165,173
dpse end:
164,405
dpse len:
769

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.6

percent iden:
56.0%

D.mel sites:
10
D.pse sites:
8
Aligned sites:
4
Aligned + preserved sites:
6

D.mel site dens:
11.4
D.pse site dens:
10.4
Aligned site dens:
4.6
Aligned + preserved site dens:
6.8

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+2901
5' gene CG:
CG7771
5' gene:
sim
5' Gap/pair-rule annotation:
BDGP
5' gene insitu:
sim insitu
5' gene flybase:
sim flybase
5' gene start:
8,898,142
5' gene end:
8,903,969
5' gene txl start:
8,898,239

pCRM position 3' gene relative:
+2901
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG7771
3' gene:
sim
3' Gap/pair-rule annotation:
BDGP
3' gene insitu:
sim insitu
3' gene flybase:
sim flybase
3' gene start:
8,898,142
3' gene end:
8,903,969
3' gene txl start:
8,898,239

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: