pCRM PCE8644

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8644
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
9,293,440
pCRM end:
9,294,271
pCRM len:
832

D.pse fasta:
dpse unflanked
dpse arm:
3,212,385
dpse start:
332,380
dpse end:
331,563
dpse len:
818

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.6

percent iden:
69.6%

D.mel sites:
10
D.pse sites:
7
Aligned sites:
5
Aligned + preserved sites:
7

D.mel site dens:
12.0
D.pse site dens:
8.6
Aligned site dens:
6.0
Aligned + preserved site dens:
8.4

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-1,593
5' gene CG:
CG17025
5' gene:
CG17025
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG17025 flybase
5' gene start:
9,291,847
5' gene end:
9,284,075
5' gene txl start:
9,284,252

pCRM position 3' gene relative:
+55005
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG12538
3' gene:
CG12538
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG12538 flybase
3' gene start:
9,349,276
3' gene end:
9,348,691
3' gene txl start:
9,349,276

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: