pCRM PCE8648

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Region plotRegion plot detailDotplot
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CRM:
PCE8648
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
19,685,652
pCRM end:
19,687,030
pCRM len:
1,379

D.pse fasta:
dpse unflanked
dpse arm:
3,213,015
dpse start:
1,329,491
dpse end:
1,327,776
dpse len:
1,716

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.6

percent iden:
57.4%

D.mel sites:
17
D.pse sites:
12
Aligned sites:
5
Aligned + preserved sites:
11

D.mel site dens:
12.3
D.pse site dens:
7.0
Aligned site dens:
3.6
Aligned + preserved site dens:
8.0

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+19424
5' gene CG:
CG5212
5' gene:
Pli
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
Pli flybase
5' gene start:
19,706,454
5' gene end:
19,676,532
5' gene txl start:
19,705,446

pCRM position 3' gene relative:
+19424
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG5212
3' gene:
Pli
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
Pli flybase
3' gene start:
19,706,454
3' gene end:
19,676,532
3' gene txl start:
19,705,446

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: