pCRM PCE8653

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Region plotRegion plot detailDotplot
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CRM:
PCE8653
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
675,079
pCRM end:
675,817
pCRM len:
739

D.pse fasta:
dpse unflanked
dpse arm:
3,213,126
dpse start:
647,140
dpse end:
646,477
dpse len:
664

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.6

percent iden:
57.4%

D.mel sites:
10
D.pse sites:
8
Aligned sites:
5
Aligned + preserved sites:
6

D.mel site dens:
13.5
D.pse site dens:
12.0
Aligned site dens:
6.8
Aligned + preserved site dens:
8.1

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-18,095
5' gene CG:
CG14659
5' gene:
CG14659
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG14659 flybase
5' gene start:
656,984
5' gene end:
656,690
5' gene txl start:
656,984

pCRM position 3' gene relative:
-2,748
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG1133
3' gene:
opa
3' Gap/pair-rule annotation:
BDGP
3' gene insitu:
opa insitu
3' gene flybase:
opa flybase
3' gene start:
678,565
3' gene end:
695,708
3' gene txl start:
678,826

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: