pCRM PCE8656

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Region plotRegion plot detailDotplot
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CRM:
PCE8656
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
2,168,910
pCRM end:
2,169,699
pCRM len:
790

D.pse fasta:
dpse unflanked
dpse arm:
3,212,166
dpse start:
325,936
dpse end:
324,836
dpse len:
1,101

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
3.6

percent iden:
69.7%

D.mel sites:
13
D.pse sites:
8
Aligned sites:
4
Aligned + preserved sites:
8

D.mel site dens:
16.5
D.pse site dens:
7.3
Aligned site dens:
5.1
Aligned + preserved site dens:
10.1

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-1,239
5' gene CG:
CG12496
5' gene:
EG:BACH7M4.4
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
EG:BACH7M4.4 flybase
5' gene start:
2,167,671
5' gene end:
2,166,128
5' gene txl start:
2,167,568

pCRM position 3' gene relative:
+12778
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG32797
3' gene:
CG32797
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG32797 flybase
3' gene start:
2,182,477
3' gene end:
2,181,868
3' gene txl start:
2,182,477

Additional Gap/pair-rule gene within 20kb:
gt
Gap/pair-rule annotation:
BDGP
pCRM relative position:
16,825